To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proteoQC")

In most cases, you don't need to download the package archive at all.

proteoQC

An R package for proteomics data quality control

Bioconductor version: 3.0

This package creates a HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proteoQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteoQC")

PDF	R Script	proteoQC tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.0 (R-3.1)
License	LGPL-2
Depends	R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports	rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, Rcpp (>= 0.11.1)
LinkingTo	Rcpp
Suggests	RforProteomics(>= 1.0.16), knitr, BiocStyle, rpx, R.utils, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	proteoQC_1.2.0.tar.gz
Windows Binary	proteoQC_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	proteoQC_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	proteoQC_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center