To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proteoQC")

In most cases, you don't need to download the package archive at all.

proteoQC

An R package for proteomics data quality control

Bioconductor version: 3.0

This package creates a HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proteoQC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteoQC")

 

PDF R Script proteoQC tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.0 (R-3.1)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, Rcpp (>= 0.11.1)
LinkingTo Rcpp
Suggests RforProteomics(>= 1.0.16), knitr, BiocStyle, rpx, R.utils, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source proteoQC_1.2.0.tar.gz
Windows Binary proteoQC_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) proteoQC_1.2.0.tgz
Mac OS X 10.9 (Mavericks) proteoQC_1.2.0.tgz
Browse/checkout source (username/password: readonly)
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