To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proBAMr")

In most cases, you don't need to download the package archive at all.

proBAMr

Generating SAM file for PSMs in shotgun proteomics data.

Bioconductor version: 3.0

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("proBAMr")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("proBAMr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")

PDF	R Script	Introduction to proBAMr
PDF		Reference Manual
Text		NEWS

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.0.1
In Bioconductor since	BioC 3.0 (R-3.1)
License	Artistic-2.0
Depends	R (>= 3.0.1), IRanges, AnnotationDbi
Imports	GenomicRanges, Biostrings, GenomicFeatures, rtracklayer
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	proBAMr_1.0.1.tar.gz
Windows Binary	proBAMr_1.0.1.zip
Mac OS X 10.6 (Snow Leopard)	proBAMr_1.0.1.tgz
Mac OS X 10.9 (Mavericks)	proBAMr_1.0.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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