To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

In most cases, you don't need to download the package archive at all.

motifRG

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 3.0

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("motifRG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF R Script motifRG: regression-based discriminative motif discovery
PDF   Reference Manual

Details

biocViews MotifDiscovery, Software, Transcription
Version 1.10.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
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SystemRequirements
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URL
Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source motifRG_1.10.0.tar.gz
Windows Binary motifRG_1.10.0.zip
Mac OS X 10.6 (Snow Leopard) motifRG_1.10.0.tgz
Mac OS X 10.9 (Mavericks) motifRG_1.10.0.tgz
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