To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("frma")
In most cases, you don't need to download the package archive at all.
frma
Frozen RMA and Barcode
Bioconductor version: 3.0
Preprocessing and analysis for single microarrays and microarray batches.
Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>, with contributions from Terry Therneau
Maintainer: Matthew N. McCall <mccallm at gmail.com>
Citation (from within R,
enter citation("frma")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("frma")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("frma")
| R Script | frma: Preprocessing for single arrays and array batches | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0), Biobase(>= 2.6.0) |
| Imports | Biobase, MASS, DBI, affy, methods, oligo, oligoClasses, preprocessCore, utils, BiocGenerics |
| LinkingTo | |
| Suggests | hgu133afrmavecs, frmaExampleData |
| SystemRequirements | |
| Enhances | |
| URL | http://bioconductor.org |
| Depends On Me | |
| Imports Me | ChIPXpress, DeSousa2013 |
| Suggests Me | antiProfilesData, frmaTools |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | frma_1.18.0.tar.gz |
| Windows Binary | frma_1.18.0.zip |
| Mac OS X 10.6 (Snow Leopard) | frma_1.18.0.tgz |
| Mac OS X 10.9 (Mavericks) | frma_1.18.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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