To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("customProDB")

In most cases, you don't need to download the package archive at all.

customProDB

Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.

Bioconductor version: 3.0

Generate customized protein sequence database from RNA-Seq data for proteomics search

Author: xiaojing wang

Maintainer: xiaojing wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("customProDB")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("customProDB")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customProDB")

PDF	R Script	Introduction to customProDB
PDF		Reference Manual
Text		NEWS

biocViews	Proteomics, Software
Version	1.6.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports	IRanges, GenomicRanges, Rsamtools(>= 1.10.2), GenomicAlignments, Biostrings(>= 2.26.3), GenomicFeatures(>= 1.17.13), biomaRt(>= 2.17.1), stringr, RCurl, plyr, VariantAnnotation(>= 1.7.28), rtracklayer, RSQLite, AnnotationDbi
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

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