To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")
In most cases, you don't need to download the package archive at all.
UNDO
Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
Bioconductor version: 3.0
UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.
Author: Niya Wang <wangny at vt.edu>
Maintainer: Niya Wang <wangny at vt.edu>
Citation (from within R,
enter citation("UNDO")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("UNDO")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UNDO")
| R Script | UNDO Demo | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) |
| License | GPL-2 |
| Depends | R (>= 2.15.2), methods, BiocGenerics, Biobase |
| Imports | MASS, boot, nnls, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | UNDO_1.8.0.tar.gz |
| Windows Binary | UNDO_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | UNDO_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | UNDO_1.8.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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