To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

In most cases, you don't need to download the package archive at all.

ArrayExpressHTS

ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 3.0

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at ebi.ac.uk>, Andrew Tikhonov <andrew at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpressHTS")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpressHTS")

PDF	R Script	ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF		Reference Manual
Text		NEWS

biocViews	RNASeq, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic License 2.0
Depends	sampling, Rsamtools(>= 1.3.32), snow
Imports	Biobase, BiocGenerics, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils, sendmailR, bitops
LinkingTo	Rsamtools
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