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source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

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AllelicImbalance

Investigates allele specific expression

Bioconductor version: 3.0

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Citation (from within R, enter citation("AllelicImbalance")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

biocViews	Genetics, Infrastructure, Sequencing, Software
Version	1.4.2
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 3.1.0), grid, GenomicRanges, GenomicAlignments
Imports	methods, BiocGenerics, AnnotationDbi, Biostrings, S4Vectors, IRanges, Rsamtools, GenomicFeatures, Gviz, lattice, GenomeInfoDb
LinkingTo
Suggests	testthat, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
SystemRequirements
Enhances
URL	https://github.com/pappewaio/AllelicImbalance
Depends On Me
Imports Me
Suggests Me
Build Report

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