statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.9

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to clusterProfiler
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Clustering, GO, Pathways, Visualization, MultipleComparisons
Depends stats, ggplot2, plyr
Imports methods, DBI, qvalue, AnnotationDbi, GO.db, KEGG.db,,, org.Sc.sgd.db
Suggests GOSemSim, DOSE
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me DOSE, GOSemSim
Version 1.2.1
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source clusterProfiler_1.2.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary clusterProfiler_1.2.1.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:


Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center