GOSemSim

GO-terms Semantic Similarity Measures

Bioconductor version: 2.9

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOSemSim")

To cite this package in a publication, start R and enter:

    citation("GOSemSim")

Documentation

PDF	R Script	An introduction to GOSemSim
PDF		Reference Manual
Text		NEWS

Details

biocViews	GO, Clustering, Pathways, Bioinformatics
Depends	DOSE, R (>= 2.10)
Imports	methods, AnnotationDbi, GO.db, org.Hs.eg.db, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db
Suggests	clusterProfiler
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE
Version	1.12.1
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	GOSemSim_1.12.1.tar.gz
Windows Binary	GOSemSim_1.12.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOSemSim_1.12.1.tgz
Package Downloads Report	Download Stats

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