KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Bioconductor version: 2.9

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

Author: Jitao David Zhang

Maintainer: Jitao David Zhang <jitao_david.zhang at roche.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("KEGGgraph")

To cite this package in a publication, start R and enter:

    citation("KEGGgraph")

Documentation

Details

Package Downloads