To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")

In most cases, you don't need to download the package archive at all.

genoset

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see genoset.

Provides classes similar to ExpressionSet for copy number analysis

Bioconductor version: 2.8

Load, manipulate, and plot copynumber and BAF data. GenoSet class extends eSet by adding a "locData" slot for a RangedData object from the IRanges package. This object contains feature genome location data and provides for simple subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data.

Author: Peter M. Haverty

Maintainer: Peter M. Haverty <phaverty at gene.com>

Citation (from within R, enter citation("genoset")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genoset")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genoset")

 

PDF genoset.pdf
PDF   Reference Manual

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License Artistic-2.0
Depends Biobase, IRanges
Imports Biobase, DNAcopy, graphics, IRanges, methods, stats
LinkingTo
Suggests RUnit
SystemRequirements
Enhances multicore
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genoset_1.0.0.tar.gz
Windows Binary genoset_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genoset/tree/release-2.8
Package Short Url http://bioconductor.org/packages/genoset/
Package Downloads Report Download Stats

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