To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

In most cases, you don't need to download the package archive at all.

cghMCR

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see cghMCR.

Find chromosome regions showing common gains/losses

Bioconductor version: 2.8

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

PDF		findMCR.pdf
PDF		Reference Manual

biocViews	CopyNumberVariants, Microarray, Software
Version	1.10.0
In Bioconductor since	BioC 1.8 (R-2.3) (10 years)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	cghMCR_1.10.0.tar.gz
Windows Binary	cghMCR_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/cghMCR/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/cghMCR/
Package Downloads Report	Download Stats

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