To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

In most cases, you don't need to download the package archive at all.

cghMCR

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see cghMCR.

Find chromosome regions showing common gains/losses

Bioconductor version: 2.8

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF findMCR.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software
Version 1.10.0
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License LGPL
Depends methods, DNAcopy, CNTools, limma
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cghMCR_1.10.0.tar.gz
Windows Binary cghMCR_1.10.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cghMCR/tree/release-2.8
Package Short Url http://bioconductor.org/packages/cghMCR/
Package Downloads Report Download Stats

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