To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

In most cases, you don't need to download the package archive at all.

cellHTS2

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see cellHTS2.

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.8

Analysis of cell-based RNA interference screens. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("cellHTS2")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellHTS2")

 

PDF cellhts2.pdf
PDF cellhts2Complete.pdf
PDF twoChannels.pdf
PDF twoWay.pdf
PDF   Reference Manual

Details

biocViews CellBasedAssays, Preprocessing, Software, Visualization
Version 2.16.0
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License Artistic-2.0
Depends RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports prada, GSEABase, Category
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Depends On Me coRNAi, HTSanalyzeR, imageHTS
Imports Me HTSanalyzeR, RNAinteract
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cellHTS2_2.16.0.tar.gz
Windows Binary cellHTS2_2.16.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cellHTS2/tree/release-2.8
Package Short Url http://bioconductor.org/packages/cellHTS2/
Package Downloads Report Download Stats

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