To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PatientGeneSets")

In most cases, you don't need to download the package archive at all.

PatientGeneSets

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see PatientGeneSets.

Patient-oriented gene-set analysis

Bioconductor version: 2.8

Patient-oriented analysis of mutations from cancer genome studies.

Author: Simina M. Boca, Giovanni Parmigiani

Maintainer: Simina M. Boca <sboca at jhsph.edu>

Citation (from within R, enter citation("PatientGeneSets")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PatientGeneSets")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PatientGeneSets")

PDF		PatientGeneSets.pdf
PDF		Reference Manual

biocViews	Bioinformatics, Software
Version	1.2.0
In Bioconductor since	BioC 2.7 (R-2.12) (5.5 years)
License	GPL (>= 2.0)
Depends	R (>= 2.10.0), qvalue
Imports	AnnotationDbi, limma, methods, stats
LinkingTo
Suggests	KEGG.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	PatientGeneSets_1.2.0.tar.gz
Windows Binary	PatientGeneSets_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/PatientGeneSets/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/PatientGeneSets/
Package Downloads Report	Download Stats

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