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SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.14

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at>

Maintainer: David Clayton <dc208 at>

Citation (from within R, enter citation("snpStats")):


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PDF R Script Data input
PDF R Script Fst
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual


biocViews GeneticVariability, Microarray, SNP, Software
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R (>= 2.10.0), survival, Matrix, methods
Imports graphics, grDevices, stats, utils, BiocGenerics
Suggests hexbin
System Requirements
Depends On Me GGBase, GGdata, ggtut
Imports Me FunciSNP, GGtools, gwascat
Suggests Me crlmm, GWASTools, VariantAnnotation

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Package Source snpStats_1.14.0.tar.gz
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