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biocLite("snpStats")

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snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.14

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("snpStats")

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browseVignettes("snpStats")

PDF	R Script	Data input
PDF	R Script	Fst
PDF	R Script	Imputation and meta-analysis
PDF	R Script	LD statistics
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpStats introduction
PDF	R Script	TDT tests
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.14.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends	R (>= 2.10.0), survival, Matrix, methods
Imports	graphics, grDevices, stats, utils, BiocGenerics
Suggests	hexbin
System Requirements
URL
Depends On Me	GGBase, GGdata, ggtut
Imports Me	FunciSNP, GGtools, gwascat
Suggests Me	crlmm, GWASTools, VariantAnnotation

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