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Tools for Genome Wide Association Studies

Bioconductor version: 2.14

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Author: Stephanie M. Gogarten, Cathy Laurie, Tushar Bhangale, Matthew P. Conomos, Cecelia Laurie, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Jess Shen, Rohit Swarnkar, Adrienne Stilp

Maintainer: Stephanie M. Gogarten <sdmorris at>, Adrienne Stilp <amstilp at>

Citation (from within R, enter citation("GWASTools")):


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PDF R Script Converting VCF data for use in GWASTools
PDF R Script Data formats in GWASTools
PDF R Script GWAS Data Cleaning
PDF R Script Preparing Affymetrix Data
PDF   Reference Manual
Text   NEWS


biocViews GeneticVariability, Microarray, QualityControl, SNP, Software
Version 1.10.1
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends Biobase, ncdf, gdsfmt, sandwich
Imports methods, DBI, RSQLite, GWASExactHW, DNAcopy, survival, lmtest, quantsmooth
Suggests GWASdata, BiocGenerics, RUnit, SNPRelate, snpStats, VariantAnnotation
System Requirements
Depends On Me GWASdata
Imports Me
Suggests Me

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Package Source GWASTools_1.10.1.tar.gz
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Mac OS X 10.6 (Snow Leopard) GWASTools_1.10.1.tgz
Mac OS X 10.9 (Mavericks) GWASTools_1.10.1.tgz
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