To install this package, start R and enter:


In most cases, you don't need to download the package archive at all.


Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: 2.14

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Citation (from within R, enter citation("aCGH")):


To install this package, start R and enter:



To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script aCGH Overview
PDF   Reference Manual


biocViews CopyNumberVariation, DataImport, Genetics, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License GPL-2
Depends R (>= 2.10), cluster, survival, multtest
Imports Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
System Requirements
Depends On Me CRImage
Imports Me ADaCGH2, snapCGH
Suggests Me beadarraySNP

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source aCGH_1.42.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) aCGH_1.42.0.tgz
Mac OS X 10.9 (Mavericks) aCGH_1.42.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center