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GO-terms Semantic Similarity Measures

Bioconductor version: 2.14

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at>

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PDF R Script An introduction to GOSemSim
PDF   Reference Manual
Text   NEWS


biocViews Clustering, GO, Network, Pathways, Software
Version 1.22.0
In Bioconductor since BioC 2.4 (R-2.9)
License GPL-2
Depends R (>= 2.10), Rcpp
Imports methods, AnnotationDbi, GO.db,, Rcpp
Suggests DOSE, clusterProfiler, BiocInstaller, knitr
System Requirements
Depends On Me tRanslatome
Imports Me clusterProfiler, DOSE, Rcpi
Suggests Me ChIPseeker, ReactomePA

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Package Source GOSemSim_1.22.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GOSemSim_1.22.0.tgz
Mac OS X 10.9 (Mavericks) GOSemSim_1.22.0.tgz
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