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Disease Ontology Semantic and Enrichment analysis

Bioconductor version: 2.14

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at>

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PDF R Script DOSE - an R package for Disease Ontology Semantic and Enrichment
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Software
Version 2.2.1
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, igraph, scales, reshape2, graphics, GOSemSim, grid
Suggests clusterProfiler, ReactomePA, knitr,
System Requirements
Depends On Me
Imports Me clusterProfiler, ReactomePA
Suggests Me ChIPseeker, GOSemSim

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Package Source DOSE_2.2.1.tar.gz
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