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Bioconductor version: 2.14
Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.
Author: Habil Zare and Alex Hu
Maintainer: Habil Zare <zare at u.washington.edu>
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enter citation("Clomial")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("Clomial")
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browseVignettes("Clomial")
A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples | ||
Reference Manual | ||
Text | NEWS |
biocViews | Bayesian, Clustering, DNASeq, ExomeSeq, GeneticVariability, Genetics, MultipleComparison, Sequencing, Software, TargetedResequencing |
Version | 1.0.0 |
In Bioconductor since | BioC 2.14 (R-3.1) |
License | GPL (>= 2) |
Depends | R (>= 2.10), matrixStats |
Imports | methods |
Suggests | |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | Clomial_1.0.0.tar.gz |
Windows Binary | Clomial_1.0.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | Clomial_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | Clomial_1.0.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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