Clomial-package |
Fits a binomial model to data from multiple samples of a single tumor to infer its clonal decomposition. |
breastCancer |
Breast cancer data for clonal decomposition. |
choose.best |
Chooses the best trained Clomial model. |
Clomial |
Fits several binomial models to data from multiple samples of a single tumor. |
Clomial.generate.data |
Generates simulated data to test performance of Clomial algorithm. |
Clomial.iterate |
Runs EM iterations until convergence of the Clomial model. |
Clomial.likelihood |
Computes the complete data log-likelihood of a Clomial model. |
Clomial1000 |
Pre-computed results of Clomial. |
compute.bic |
Computes BIC for a Clomial model. |