source("http://bioconductor.org/biocLite.R")
biocLite("cheung2010")

cheung2010

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: 2.13

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cheung2010")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cheung2010")

 

PDF	R Script	cheungTrans: checking trans eQTL with hgfocus arrays
PDF		Reference Manual

Details

biocViews	ExperimentData, GeneticVariability, RNAseqData
Version	0.0.29
License	Artistic 2.0
Depends	R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports	AnnotationDbi
Suggests	SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109
System Requirements
URL
Depends On Me	ggtut
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	cheung2010_0.0.29.tar.gz
Windows Binary	cheung2010_0.0.29.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cheung2010_0.0.29.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats