source("http://bioconductor.org/biocLite.R")
biocLite("seqbias")

seqbias

Estimation of per-position bias in high-throughput sequencing data

Bioconductor version: 2.13

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

Author: Daniel Jones <dcjones at cs.washington.edu>

Maintainer: Daniel Jones <dcjones at cs.washington.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqbias")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqbias")

 

PDF	R Script	Assessing and Adjusting for Technical Bias in High Throughput Sequencing Data
PDF		Reference Manual

Details

biocViews	HighThroughputSequencing, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	LGPL-3
Depends	R (>= 2.13.0), GenomicRanges(>= 0.1.0), Biostrings(>= 2.15.0), methods
Imports	zlibbioc
Suggests	Rsamtools, ggplot2
System Requirements
URL
Depends On Me	ReQON
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	seqbias_1.10.0.tar.gz
Windows Binary	seqbias_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	seqbias_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats