source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: 2.13

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <ccabansk at genome.wustl.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

 

PDF	R Script	ReQON Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-2
Depends	R (>= 2.15.0), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
Suggests
System Requirements	Java version >= 1.6
URL
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ReQON_1.8.0.tar.gz
Windows Binary	ReQON_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ReQON_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats