source("http://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

r3Cseq

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: 2.13

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("r3Cseq")

 

PDF	R Script	r3Cseq
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, Preprocessing, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	GenomicRanges, Rsamtools, data.table, rtracklayer, VGAM, qvalue, RColorBrewer, sqldf, methods
Imports
Suggests	BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL	http://r3cseq.genereg.net
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	r3Cseq_1.8.0.tar.gz
Windows Binary	r3Cseq_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	r3Cseq_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats