source("http://bioconductor.org/biocLite.R")
biocLite("mitoODE")

mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted).

Bioconductor version: 2.13

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted).

Author: Gregoire Pau

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mitoODE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mitoODE")

 

PDF	R Script	mitoODE
PDF		model.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, ExperimentData, Preprocessing, Software, TimeCourse
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	LGPL
Depends	R (>= 2.14.0), minpack.lm, MASS, parallel, mitoODEdata, KernSmooth
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	mitoODE_1.0.0.tar.gz
Windows Binary	mitoODE_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	mitoODE_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats