source("http://bioconductor.org/biocLite.R")
biocLite("genefu")

genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: 2.13

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhaibeka at jimmy.harvard.edu>, Markus Schroeder <mschroed at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("genefu")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefu")

 

PDF	R Script	genefu An Introduction (HowTo)
PDF		Reference Manual
Text		README

Details

biocViews	Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), survcomp, mclust, biomaRt
Imports	amap
Suggests	GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
System Requirements
URL	http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me	breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	genefu_1.12.0.tar.gz
Windows Binary	genefu_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	genefu_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats