source("http://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

cellHTS2

Analysis of cell-based screens - revised version of cellHTS

Bioconductor version: 2.13

This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.

Author: Ligia Bras, Wolfgang Huber <whuber at embl.de>, Michael Boutros <m.boutros at dkfz.de>, Gregoire Pau <gpau at embl.de>, Florian Hahne <florian.hahne at novartis.com>

Maintainer: Joseph Barry <joseph.barry at embl.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cellHTS2")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellHTS2")

 

PDF	R Script	Main vignette (complete version): End-to-end analysis of cell-based screens
PDF	R Script	Main vignette: End-to-end analysis of cell-based screens
PDF	R Script	Supplement: enhancer-suppressor screens
PDF	R Script	Supplement: multi-channel assays
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, Software, Visualization
Version	2.26.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	Artistic-2.0
Depends	R (>= 2.10), RColorBrewer, Biobase, methods, genefilter, splots, vsn, hwriter, locfit, grid
Imports	prada, GSEABase, Category, stats4
Suggests
System Requirements
URL	http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber
Depends On Me	coRNAi, imageHTS, staRank
Imports Me	HTSanalyzeR, RNAinteract
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	cellHTS2_2.26.0.tar.gz
Windows Binary	cellHTS2_2.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cellHTS2_2.26.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats