source("http://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

RNAinteract

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: 2.13

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer <bernd.fischer at embl.de>

Maintainer: Bernd Fischer <bernd.fischer at embl.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAinteract")

 

PDF	R Script	RNAinteract
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, QualityControl, Software, Visualization
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.12.0), abind, locfit, Biobase
Imports	RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12)
Suggests
System Requirements
URL
Depends On Me	RNAinteractMAPK
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RNAinteract_1.10.0.tar.gz
Windows Binary	RNAinteract_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RNAinteract_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats