marray
Exploratory analysis for two-color spotted microarray data
Bioconductor version: Release (2.12)
Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.
Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.
Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("marray")
To cite this package in a publication, start R and enter:
citation("marray")
Documentation
| ExampleHTML.pdf | ||
| R Script | marray Normalization | |
| R Script | marray Overview | |
| R Script | marrayClasses Overview | |
| R Script | marrayClasses Tutorial (short) | |
| R Script | marrayInput Introduction | |
| R Script | marrayPlots Overview | |
| widget1.pdf | ||
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-1.11) or earlier |
| License | LGPL |
| Depends | R (>= 2.10.0), limma, methods |
| Imports | |
| Suggests | tkWidgets |
| System Requirements | |
| URL | http://www.maths.usyd.edu.au/u/jeany/ |
| Depends On Me | beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, MineICA, nnNorm, OLIN, stepNorm, TurboNorm |
| Imports Me | arrayQuality, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse |
| Suggests Me | Agi4x44PreProcess, AgiMicroRna, DEGraph, Mfuzz |
Package Downloads
| Package Source | marray_1.38.0.tar.gz |
| Windows Binary | marray_1.38.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | marray_1.38.0.tgz |
| Package Downloads Report | Download Stats |
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