TurboNorm

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Release (2.12)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TurboNorm")

To cite this package in a publication, start R and enter:

    citation("TurboNorm")

Documentation

PDF R Script TurboNorm Overview
PDF   Reference Manual
Text   NEWS

Details

biocViews CpGIsland, DNAMethylation, Microarray, OneChannel, Preprocessing, Software, TwoChannel
Version 1.8.0
In Bioconductor since BioC 2.8 (R-2.13)
License LGPL
Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports stats, grDevices, affy, lattice
Suggests affydata, affy, lattice
System Requirements
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source TurboNorm_1.8.0.tar.gz
Windows Binary TurboNorm_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TurboNorm_1.8.0.tgz
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