TurboNorm

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Release (2.12)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TurboNorm")

To cite this package in a publication, start R and enter:

    citation("TurboNorm")

Documentation

PDF	R Script	TurboNorm Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	CpGIsland, DNAMethylation, Microarray, OneChannel, Preprocessing, Software, TwoChannel
Version	1.8.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	LGPL
Depends	R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports	stats, grDevices, affy, lattice
Suggests	affydata, affy, lattice
System Requirements
URL	http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	TurboNorm_1.8.0.tar.gz
Windows Binary	TurboNorm_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TurboNorm_1.8.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center