ReactomePA

Reactome Pathway Analysis

Bioconductor version: Release (2.12)

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReactomePA")

To cite this package in a publication, start R and enter:

    citation("ReactomePA")

Documentation

PDF	R Script	An introduction to ReactomePA
PDF		cnetplot.pdf
PDF		rPAclusterProfiler.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Pathways, Software, Visualization
Version	1.4.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL-2
Depends	R (>= 2.10), DOSE
Imports	methods, AnnotationDbi, reactome.db, org.Hs.eg.db, stats4, plyr, igraph, qvalue, graphics
Suggests	clusterProfiler, GOSemSim, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE

Package Downloads

Package Source	ReactomePA_1.4.0.tar.gz
Windows Binary	ReactomePA_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ReactomePA_1.4.0.tgz
Package Downloads Report	Download Stats

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