DOSE

Disease Ontology Semantic and Enrichment analysis

Bioconductor version: Release (2.12)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DOSE")

To cite this package in a publication, start R and enter:

    citation("DOSE")

Documentation

PDF R Script An introduction to DOSE
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Bioinformatics, Software
Version 1.6.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, reshape2, graphics, GOSemSim
Suggests clusterProfiler, ReactomePA
System Requirements
URL
Depends On Me ReactomePA
Imports Me clusterProfiler
Suggests Me GOSemSim

Package Downloads

Package Source DOSE_1.6.0.tar.gz
Windows Binary DOSE_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DOSE_1.6.0.tgz
Package Downloads Report Download Stats

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