Bioconductor version: Release (2.11)
The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).
Author: Pan Du
Maintainer: Pan Du <dupan at northwestern.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("lumiBarnes")
To cite this package in a publication, start R and enter:
citation("lumiBarnes")
Reference Manual |
biocViews | ExperimentData, NormalTissue, OneChannel, RNAExpressionData |
Version | 1.3.9 |
License | LGPL |
Depends | R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0) |
Imports | |
Suggests | |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | arrayMvout, lumi |
Package Source | lumiBarnes_1.3.9.tar.gz |
Windows Binary | lumiBarnes_1.3.9.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) | lumiBarnes_1.3.9.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!