resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: Release (2.11)

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at>

Maintainer: Vince Carey <stvjc at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF arr2hap.pdf
PDF R Script cheungTrans: checking trans eQTL with hgfocus arrays
PDF   Reference Manual


biocViews ExperimentData, GeneticVariability, RNAseqData
Version 0.0.26
License Artistic 2.0
Depends R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports AnnotationDbi
Suggests SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109,
System Requirements
Depends On Me ggtut
Imports Me
Suggests Me

Package Downloads

Package Source cheung2010_0.0.26.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) cheung2010_0.0.26.tgz
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