FunciSNP.data

Various data sets for use with the FunciSNP package

Bioconductor version: Release (2.11)

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("FunciSNP.data")

To cite this package in a publication, start R and enter:

    citation("FunciSNP.data")

Documentation

PDF R Script FunciSNP Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, DataImport, DataRepresentation, ExperimentData, Infrastructure, SequenceMatching
Version 0.99.1
License GPL-3
Depends R (>= 2.14.0)
Imports rtracklayer
Suggests
System Requirements
URL http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
Depends On Me FunciSNP
Imports Me
Suggests Me

Package Downloads

Package Source FunciSNP.data_0.99.1.tar.gz
Windows Binary FunciSNP.data_0.99.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) FunciSNP.data_0.99.1.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center