Label-free data analysis pipeline for optimal identification and quantitation

Bioconductor version: Release (2.11)

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

Author: Laurent Gatto, Pavel V. Shliaha and Nick J. Bond

Maintainer: Laurent Gatto <lg390 at>

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PDF R Script synapter
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, GUI, MassSpectrometry, Proteomics, Software
Version 1.0.1
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 2.15), methods, MSnbase
Imports hwriter, tcltk, tcltk2, RColorBrewer, lattice, qvalue, multtest, utils, Biobase
Suggests synapterdata, knitr, xtable
System Requirements
Depends On Me synapterdata
Imports Me
Suggests Me

Package Downloads

Package Source synapter_1.0.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) synapter_1.0.1.tgz
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