MSnbase: Base Functions and Classes for MS-based Proteomics

Bioconductor version: Release (2.11)

Basic plotting, data manipulation and processing of MS-based Proteomics data

Author: Laurent Gatto <lg390 at> with contributions from Guangchuang Yu <guangchuangyu at>

Maintainer: Laurent Gatto <lg390 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Base Functions and Classes for MS-based Proteomics
PDF itraqchem.pdf
PDF R Script MSnbase development
PDF R Script MSnbase IO capabilities
PDF plotMzDelta-pride12011.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Infrastructure, MassSpectrometry, Proteomics, Software
Version 1.6.2
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends R (>= 2.10), methods, BiocGenerics(>= 0.1.3), Biobase(>= 2.15.2), ggplot2, mzR
Imports plyr, IRanges, preprocessCore, vsn, grid, reshape2, stats4, affy
Suggests testthat, zoo, knitr, rols, Rdisop
System Requirements
Depends On Me synapter
Imports Me
Suggests Me isobar

Package Downloads

Package Source MSnbase_1.6.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) MSnbase_1.6.2.tgz
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