minfi

Analyze Illumina's 450k methylation arrays

Bioconductor version: Release (2.11)

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen, Martin Aryee

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("minfi")

To cite this package in a publication, start R and enter:

    citation("minfi")

biocViews	DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.4.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	methods, BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), lattice, reshape, GenomicRanges, Biostrings, utils
Imports	BiocGenerics, beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, crlmm, matrixStats, mclust
Suggests	IlluminaHumanMethylation450kmanifest(>= 0.2.0), minfiData(>= 0.2.0), RUnit
System Requirements
URL
Depends On Me	IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation450kannotation.ilmn.v1.2, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kmanifest, minfiData
Imports Me
Suggests Me

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!