Analysis of high-throughput microscopy-based screens

Bioconductor version: Release (2.11)

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Gregoire Pau <gregoire.pau at>

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PDF R Script Analysis of high-throughput microscopy-based screens with imageHTS
PDF   Reference Manual


biocViews CellBasedAssays, Preprocessing, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 2.7 (R-2.12)
License LGPL-2.1
Depends R (>= 2.9.0), EBImage(>= 3.99.17), cellHTS2(>= 2.10.0)
Imports tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Suggests MASS
System Requirements
Depends On Me phenoDist
Imports Me
Suggests Me

Package Downloads

Package Source imageHTS_1.8.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) imageHTS_1.8.0.tgz
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