cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: Release (2.11)

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cghMCR")

To cite this package in a publication, start R and enter:

    citation("cghMCR")

Documentation

PDF R Script cghMCR findMCR
PDF   Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software
Version 1.16.0
In Bioconductor since BioC 1.8 (R-2.3)
License LGPL
Depends methods, DNAcopy, CNTools, limma
Imports BiocGenerics(>= 0.1.6), stats4
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System Requirements
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Package Downloads

Package Source cghMCR_1.16.0.tar.gz
Windows Binary cghMCR_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) cghMCR_1.16.0.tgz
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