Functions useful for those doing repetitive analyses with Affymetrix GeneChips.

Bioconductor version: Release (2.11)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script affycoretools biomaRt Integration
PDF R Script affycoretools Overview
PDF   Reference Manual


biocViews GeneExpression, Microarray, OneChannel, ReportWriting, Software
Version 1.30.0
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic-2.0
Depends affy, Biobase, GO.db, KEGG.db
Imports biomaRt, limma, GOstats, annotate, annaffy, genefilter, gcrma, splines, xtable, AnnotationDbi, lattice, gplots
Suggests affydata, hgfocuscdf, rgl
System Requirements
Depends On Me
Imports Me
Suggests Me Agi4x44PreProcess

Package Downloads

Package Source affycoretools_1.30.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) affycoretools_1.30.0.tgz
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