PGSEA

Parametric Gene Set Enrichment Analysis

Bioconductor version: Release (2.11)

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PGSEA")

To cite this package in a publication, start R and enter:

    citation("PGSEA")

Documentation

PDF R Script HOWTO: PGSEA
PDF R Script HOWTO: PGSEA Example Workflow
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.32.0
In Bioconductor since BioC 2.0 (R-2.5)
License GPL-2
Depends R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
Suggests GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
System Requirements
URL
Depends On Me GeneExpressionSignature
Imports Me
Suggests Me

Package Downloads

Package Source PGSEA_1.32.0.tar.gz
Windows Binary PGSEA_1.32.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) PGSEA_1.32.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center