virtualArray

Build virtual array from different microarray platforms

Bioconductor version: 2.10

This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.

Author: Andreas Heider

Maintainer: Andreas Heider <aheider at trm.uni-leipzig.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("virtualArray")

To cite this package in a publication, start R and enter:

    citation("virtualArray")

Documentation

PDF	R Script	virtualArray Vignette
PDF	R Script	virtualArray-016.pdf
PDF	R Script	virtualArray-022.pdf
PDF	R Script	virtualArray-023.pdf
PDF		Reference Manual

Details

biocViews	Bioinformatics, DataImport, Microarray, MultipleComparisons, OneChannel, Preprocessing, Software
Depends	R (>= 2.3.0), methods, plyr, preprocessCore
Imports	affy, affyPLM, AnnotationDbi, Biobase, gcrma, GEOquery, graphics, methods, reshape2, stats, utils
Suggests	affydata, plier, limma, lumi, org.Hs.eg.db
System Requirements
License	GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source	virtualArray_1.0.0.tar.gz
Windows Binary	virtualArray_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	virtualArray_1.0.0.tgz
Package Downloads Report	Download Stats

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