virtualArray-package | Combine raw data of several ExpressionSets into a "virtual array". |
normalize.ExpressionSet.gq | gene quantiles normalization |
normalize.ExpressionSet.mc | mean centering normalization |
normalize.ExpressionSet.mrs | median rank scores normalization |
normalize.ExpressionSet.nordi | normal discretization normalization |
normalize.ExpressionSet.qd | quantile discretization normalization |
virtualArray | Combine raw data of several ExpressionSets into a "virtual array". |
virtualArrayBuildExprs | Format ExpressionSets as data.frames with identifiers in first column |
virtualArrayBuildfData | Collapses expression values according to given identifiers |
virtualArrayBuildSampleInfo | Build data.frame suitable as "pData" for several ExpressionSets |
virtualArrayComBat | Removes batch effects from microarray derived expression matrices. Modified version. |
virtualArrayComBat-method | Removes batch effects from microarray derived expression matrices. Modified version. |
virtualArrayCompile | Compiles a single virtual array holding user provided microarray data from multiple platforms. |
virtualArrayDirs | Build virtualArray directory structure to hold raw data of multiple microarray chips |
virtualArrayExpressionSets | Combine different ExpressionSets into one |
virtualArrayHclust | Plot a hclust object with colored labels |
virtualArrayLoadRaw | Load user provided raw data files in the virtualArray directory structure |
virtualArrayMergeRecurse | Merge a list of data.frames by common rows |