ArrayExpressHTS

ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 2.10

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at ebi.ac.uk>, Andrew Tikhonov <andrew at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ArrayExpressHTS")

To cite this package in a publication, start R and enter:

    citation("ArrayExpressHTS")

PDF	R Script	ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF		Reference Manual
Text		NEWS

biocViews	HighThroughputSequencing, RNAseq, Sequencing, Software
Depends	sampling, Rsamtools(>= 1.3.32), snow
Imports	Biobase, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils
Suggests
System Requirements
License	Artistic License 2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.6.0
Since	Bioconductor 2.8 (R-2.13)

Common Bioconductor workflows include:

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