1 Detailed explanation

For a detailed manual for this section please access these links:

  1. Starburst menu manual
  2. ELMER menu manual

References

Durinck, Steffen, Paul T Spellman, Ewan Birney, and Wolfgang Huber. 2009. “Mapping Identifiers for the Integration of Genomic Datasets with the R/Bioconductor Package biomaRt.” Nature Protocols 4 (8). Nature Publishing Group:1184–91.

Giorgio, Elisa, Daniel Robyr, Malte Spielmann, Enza Ferrero, Eleonora Di Gregorio, Daniele Imperiale, Giovanna Vaula, et al. 2015. “A Large Genomic Deletion Leads to Enhancer Adoption by the Lamin B1 Gene: A Second Path to Autosomal Dominant Leukodystrophy (Adld).” Human Molecular Genetics. Oxford Univ Press, ddv065.

Gröschel, Stefan, Mathijs A Sanders, Remco Hoogenboezem, Elzo de Wit, Britta AM Bouwman, Claudia Erpelinck, Vincent HJ van der Velden, et al. 2014. “A Single Oncogenic Enhancer Rearrangement Causes Concomitant Evi1 and Gata2 Deregulation in Leukemia.” Cell 157 (2). Elsevier:369–81.

Sur, Inderpreet Kaur, Outi Hallikas, Anna Vähärautio, Jian Yan, Mikko Turunen, Martin Enge, Minna Taipale, Auli Karhu, Lauri A Aaltonen, and Jussi Taipale. 2012. “Mice Lacking a Myc Enhancer That Includes Human Snp Rs6983267 Are Resistant to Intestinal Tumors.” Science 338 (6112). American Association for the Advancement of Science:1360–3.

Yao, Lijing, Benjamin P Berman, and Peggy J Farnham. 2015. “Demystifying the Secret Mission of Enhancers: Linking Distal Regulatory Elements to Target Genes.” Critical Reviews in Biochemistry and Molecular Biology 50 (6). Taylor & Francis:550–73.

Yao, L, H Shen, PW Laird, PJ Farnham, and BP Berman. 2015. “Inferring Regulatory Element Landscapes and Transcription Factor Networks from Cancer Methylomes.” Genome Biology 16 (1):105–5.

Yates, Andrew, Wasiu Akanni, M Ridwan Amode, Daniel Barrell, Konstantinos Billis, Denise Carvalho-Silva, Carla Cummins, et al. 2015. “Ensembl 2016.” Nucleic Acids Research. Oxford Univ Press, gkv1157.

Zhou, Wanding, Peter W Laird, and Hui Shen. 2016. “Comprehensive Characterization, Annotation and Innovative Use of Infinium Dna Methylation Beadchip Probes.” Nucleic Acids Research. Oxford Univ Press, gkw967.