goseq

DOI: 10.18129/B9.bioc.goseq    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see goseq.

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 3.7

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Nadia Davidson <nadia.davidson at mcri.edu.au>, Anthony Hawkins <anthony.hawkins at mcri.edu.au>

Citation (from within R, enter citation("goseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("goseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

 

PDF R Script goseq User's Guide
PDF   Reference Manual

Details

biocViews GO, GeneExpression, RNASeq, Sequencing, Software, Transcription
Version 1.32.0
In Bioconductor since BioC 2.6 (R-2.11) (8.5 years)
License LGPL (>= 2)
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase(>= 1.9.2)
Imports mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics
LinkingTo
Suggests edgeR, org.Hs.eg.db, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me rgsepd
Imports Me ChAMP, ideal, PathwaySplice, SMITE
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package goseq_1.32.0.tar.gz
Windows Binary goseq_1.32.0.zip
Mac OS X 10.11 (El Capitan) goseq_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/goseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/goseq
Package Short Url http://bioconductor.org/packages/goseq/
Package Downloads Report Download Stats

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