BiocGenerics

DOI: 10.18129/B9.bioc.BiocGenerics    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BiocGenerics.

S4 generic functions for Bioconductor

Bioconductor version: 3.7

S4 generic functions needed by many Bioconductor packages.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BiocGenerics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocGenerics")

Documentation

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Details

biocViews Infrastructure, Software
Version 0.26.0
In Bioconductor since BioC 2.10 (R-2.15) (6.5 years)
License Artistic-2.0
Depends methods, utils, graphics, stats, parallel
Imports methods, utils, graphics, stats, parallel
LinkingTo
Suggests Biobase, S4Vectors, IRanges, GenomicRanges, Rsamtools, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase, annotate, RUnit
SystemRequirements
Enhances
URL
Depends On Me ACME, affy, affyPLM, altcdfenvs, amplican, AnnotationDbi, AnnotationForge, AnnotationHub, ATACseqQC, beadarray, bioassayR, Biobase, Biostrings, bnbc, BSgenome, bsseq, Cardinal, Category, categoryCompare, ChAMPdata, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, codelink, consensusSeekeR, copynumber, CRISPRseek, cummeRbund, DelayedArray, DESeq, dexus, ensembldb, ensemblVEP, ExperimentHub, ExperimentHubData, FEM, flowQ, GDSArray, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicScores, Genominator, genoset, ggbio, girafe, graph, GSEABase, GUIDEseq, HelloRanges, htSeqTools, interactiveDisplay, interactiveDisplayBase, IRanges, liftOver, MBASED, MeSHDbi, meshr, methyAnalysis, MIGSA, MineICA, minfi, MLInterfaces, MotifDb, MotIV, mpra, MSnbase, multtest, NADfinder, oligo, OrganismDbi, pandaR, Pbase, PICS, plethy, plyranges, PSICQUIC, PWMEnrich, RareVariantVis, REDseq, Repitools, rMAT, RNAprobR, RnBeads, RPA, rsbml, S4Vectors, scsR, shinyMethyl, ShortRead, simpleaffy, simulatorZ, soGGi, SummarizedBenchmark, TEQC, tigre, topdownr, topGO, UNDO, UniProt.ws, VanillaICE, VariantAnnotation, VariantFiltering, XVector, yamss
Imports Me affycoretools, affylmGUI, AllelicImbalance, annmap, annotate, AnnotationHubData, ArrayExpressHTS, ASpli, bamsignals, BASiCS, bigmelon, biocGraph, biosvd, biovizBase, BiSeq, blima, BrowserViz, BrowserVizDemo, BSgenome, BubbleTree, bumphunter, CAGEfightR, CAGEr, casper, ccfindR, cellHTS2, cgdv17, cghMCR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIC, ChIPComp, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, ChIPSeqSpike, chromVAR, clusterSeq, cn.mops, CNEr, CNPBayes, cobindR, compEpiTools, crlmm, crossmeta, cummeRbund, curatedCRCData, curatedOvarianData, dada2, ddCt, DEGreport, derfinder, DEScan2, DESeq2, destiny, DEXSeq, diffcoexp, diffHic, DirichletMultinomial, DOQTL, DRIMSeq, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, epigenomix, epivizrStandalone, erma, esATAC, FamAgg, fastseg, ffpe, FindMyFriends, flowBin, flowClust, flowCore, flowFP, flowQ, FlowSOM, flowStats, flowWorkspace, fmcsR, frma, FunciSNP, GA4GHclient, GA4GHshiny, gcapc, gCMAPWeb, genbankr, geneAttribution, geneClassifiers, GENESIS, GenomicAlignments, GenomicInteractions, GenomicTuples, genotypeeval, GenVisR, GGBase, GGtools, gmapR, goseq, GOTHiC, gQTLBase, gQTLstats, GSVA, Gviz, gwascat, HDF5Array, heatmaps, hiReadsProcessor, hopach, HTSeqGenie, igvR, IHW, IHWpaper, IMAS, INSPEcT, InTAD, intansv, InteractionSet, IntEREst, IONiseR, iSEE, isomiRs, IVAS, JunctionSeq, KCsmart, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, ldblock, LOLA, LVSmiRNA, M3D, MAST, matter, MEAL, metaMS, methInheritSim, MethylAid, methylPipe, methylumi, methyvim, mimager, MinimumDistance, MIRA, MiRaGE, mogsa, monocle, motifbreakR, msa, MultiAssayExperiment, MultiDataSet, multiMiR, MutationalPatterns, mzR, NarrowPeaks, ncdfFlow, npGSEA, nucleR, oligoClasses, openPrimeR, parglms, PathwaySplice, pbcmc, pcaMethods, pdInfoBuilder, phyloseq, piano, PING, plrs, podkat, prada, ProCoNA, profileScoreDist, pRoloc, PureCN, pwOmics, qsea, QuasR, R3CPET, R453Plus1Toolbox, RaggedExperiment, ramwas, Rariant, RCAS, RcisTarget, RCy3, RCyjs, recoup, REDseq, RefNet, REMP, ReportingTools, RGalaxy, RGMQL, RGSEA, RiboProfiling, Ringo, RJMCMCNucleosomes, rMAT, roar, rols, Rqc, rqubic, Rsamtools, rsbml, RTCGAToolbox, rtracklayer, SC3, scater, scmap, scPipe, scran, sevenC, SGSeq, signeR, simpleaffy, SingleCellExperiment, SLGI, SNPhood, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP151.GRCh38, snpStats, splatter, spliceSites, SplicingGraphs, sscu, STAN, Streamer, SummarizedExperiment, systemPipeR, systemPipeRdata, TarSeqQC, TCGAutils, TCseq, TFBSTools, trackViewer, transcriptR, TransView, triform, tRNAscanImport, TSRchitect, TSSi, TVTB, unifiedWMWqPCR, uSORT, VariantTools, VariantToolsData, wavClusteR, xcms, XDE, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, XVector
Suggests Me acde, AIMS, ArrayTV, ASSET, BaalChIP, baySeq, bigmelon, bigmemoryExtras, BiocCheck, BiocInstaller, BiocParallel, BiocStyle, biocViews, biosigner, BiRewire, BLMA, CAFE, CAMERA, CancerSubtypes, CAnD, CausalR, ccrepe, CellNOptR, CexoR, ChIPanalyser, ChIPXpress, CHRONOS, CINdex, clipper, clonotypeR, clustComp, CNORfeeder, CNORfuzzy, CNVPanelizer, coexnet, coMET, ConnectivityMap, cosmiq, COSNet, cpvSNP, cydar, cytofkit, DAPAR, DBChIP, DEsubs, DMRcaller, DMRcate, ENCODExplorer, ENmix, epiNEM, EventPointer, fCCAC, FGNet, flowCL, flowQB, FlowRepositoryR, flowTime, focalCall, GateFinder, gCMAP, gCrisprTools, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, genomation, GEOquery, GMRP, GOstats, GraphPAC, GreyListChIP, grndata, GWASTools, h5vc, Harman, HarmanData, hiAnnotator, hierGWAS, hypergraph, iCARE, iClusterPlus, illuminaio, InPAS, INPower, IPO, kebabs, KEGGREST, ldblock, LINC, mAPKL, massiR, MatrixRider, MBttest, mCSEA, mdgsa, Mergeomics, MeSH.Aca.eg.db, MeSH.Aga.PEST.eg.db, MeSH.Ame.eg.db, MeSH.Aml.eg.db, MeSH.Ana.eg.db, MeSH.Ani.FGSC.eg.db, MeSH.AOR.db, MeSH.Ath.eg.db, MeSH.Bfl.eg.db, MeSH.Bsu.168.eg.db, MeSH.Bta.eg.db, MeSH.Cal.SC5314.eg.db, MeSH.Cbr.eg.db, MeSH.Cel.eg.db, MeSH.Cfa.eg.db, MeSH.Cin.eg.db, MeSH.Cja.eg.db, MeSH.Cpo.eg.db, MeSH.Cre.eg.db, MeSH.Dan.eg.db, MeSH.db, MeSH.Dda.3937.eg.db, MeSH.Ddi.AX4.eg.db, MeSH.Der.eg.db, MeSH.Dgr.eg.db, MeSH.Dme.eg.db, MeSH.Dmo.eg.db, MeSH.Dpe.eg.db, MeSH.Dre.eg.db, MeSH.Dse.eg.db, MeSH.Dsi.eg.db, MeSH.Dvi.eg.db, MeSH.Dya.eg.db, MeSH.Eco.55989.eg.db, MeSH.Eco.ED1a.eg.db, MeSH.Eco.IAI39.eg.db, MeSH.Eco.K12.MG1655.eg.db, MeSH.Eco.O157.H7.Sakai.eg.db, MeSH.Eco.UMN026.eg.db, MeSH.Eqc.eg.db, MeSH.Gga.eg.db, MeSH.Gma.eg.db, MeSH.Hsa.eg.db, MeSH.Laf.eg.db, MeSH.Lma.eg.db, MeSH.Mdo.eg.db, MeSH.Mes.eg.db, MeSH.Mga.eg.db, MeSH.Miy.eg.db, MeSH.Mml.eg.db, MeSH.Mmu.eg.db, MeSH.Mtr.eg.db, MeSH.Nle.eg.db, MeSH.Oan.eg.db, MeSH.Ocu.eg.db, MeSH.Oni.eg.db, MeSH.Osa.eg.db, MeSH.Pab.eg.db, MeSH.Pae.PAO1.eg.db, MeSH.PCR.db, MeSH.Pfa.3D7.eg.db, MeSH.Pto.eg.db, MeSH.Ptr.eg.db, MeSH.Rno.eg.db, MeSH.Sce.S288c.eg.db, MeSH.Sco.A32.eg.db, MeSH.Sil.eg.db, MeSH.Spu.eg.db, MeSH.Ssc.eg.db, MeSH.Syn.eg.db, MeSH.Tbr.9274.eg.db, MeSH.Tgo.ME49.eg.db, MeSH.Tgu.eg.db, MeSH.Vvi.eg.db, MeSH.Xla.eg.db, MeSH.Xtr.eg.db, MeSH.Zma.eg.db, Metab, MetaboSignal, metagene, metagenomeSeq, metaseqR, MetCirc, methylInheritance, microbiome, microRNAome, MIGSAdata, miRBaseConverter, miRcomp, mirIntegrator, miRLAB, Mirsynergy, motifStack, MSnID, multiClust, MultiMed, multiOmicsViz, MWASTools, netbenchmark, netbiov, NetSAM, nondetects, nucleoSim, OncoScore, PAA, panelcn.mops, Path2PPI, PathNet, pathview, pepXMLTab, PGA, PhenStat, powerTCR, Prize, proBAMr, proFIA, proteoQC, qpgraph, quantro, QuartPAC, RBGL, rBiopaxParser, Rcade, rcellminer, rCGH, Rcpi, RGraph2js, Rgraphviz, rgsepd, riboSeqR, ROntoTools, ropls, RTN, RTNduals, RTNsurvival, rTRM, samExploreR, sangerseqR, SANTA, sapFinder, scmeth, segmentSeq, SeqArray, seqPattern, seqTools, SeqVarTools, SICtools, sigsquared, SIMAT, similaRpeak, SIMLR, SNPRelate, SpacePAC, sparseDOSSA, SparseSignatures, specL, STATegRa, STRINGdb, TCC, TFEA.ChIP, TIN, transcriptogramer, traseR, trena, TRONCO, Uniquorn, variancePartition
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocGenerics_0.26.0.tar.gz
Windows Binary BiocGenerics_0.26.0.zip
Mac OS X 10.11 (El Capitan) BiocGenerics_0.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocGenerics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocGenerics
Package Short Url http://bioconductor.org/packages/BiocGenerics/
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